Special Databases
 
 
Fungal Genetics Stock Center   GLUCOMA DATABASE An Eye   Molecular Database of Brain   PROPHAGE DATABASE
     

Fungal Genetics Stock Center

Developed and maintained by INDIAN INSTITUTE OF SCIENCE, BANGALORE

 

GLUCOMA DATABASE An Eye Revolution

Developed and maintained by MKU

 

Database on Brain

Developed and maintained by MKUe

 

Database on Prophage

Developed and maintained by MKU

RiDs db   RManager   MirtronPred   MycoInDB
     

A web accessible relational database, with a repository of disease genes, which can be searched by FASTA program.

Developed and maintained by Centre for Cellular and Molecular Biology

 

 

A lab to share literature data with each other and to upload and store files conveniently in one designated area.

Developed and maintained by National institute of plant genome research

 

A webserver for Intronic miRNA - Mirtrons

Developed and maintained by International Centre for Genetic Engineering and Biotechnology.

 

Mycobacterium information database

Developed and maintained by University of Hyderabad

 

Coffee database   Mulberry database   CeRA   Clostridium-DTDB
     

A web based Coffee databaser ia comprehensive database on coffee genme

Developed and maintained by Centre for Cellular and Molecular Biology

 

A web based Coffee databaser ia comprehensive database on Mulberry genme

Developed and maintained by Centre for Cellular and Molecular Biology

 

Online access to e-journals and resources in over 120 ICAR institutes

Developed and maintained by Indian Agricultural Research Institute, New Delhi

 

It provides a gateway to the information obtained from sequence annotation of clostridium and human host.

Developed and maintained by Pondicherry university

MP Brain Database   DIDV   HIVcoPRED   IFNepitope
     

A repository of molecules that actively participates in Brain functions such as Visual perception, memory storage etc. .

Developed and maintained by MADURAI KAMARAJ UNIVERSITY, MADURAI.

 

A fast, convenient and versatile open source tool to digitize any two-dimensional image data and view as colour maps.

Developed and maintained by CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY, HYDERABAD (BIC @ CCMB).

 

A web server for predicting the coreceptor usage by HIV-1. It takes amino acid sequences of Variable loop (V3) of gp120 protein of HIV and predicts the coreceptor.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for prediction and design IFN-gamma inducing peptides. It have following three modules.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

PROPRED1   CTLPred   nHLApred   BCIPEP
     

An on-line service for identifying the MHC Class-I binding regions in antigens.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

CTLPred is a direct method for prediction of CTL epitopes crucial in subunit vaccine design.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

This is a comprehensive method for prediction of MHC binding peptides or CTL epitopes of 67 MHC alleles.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Collection & compilation of B-cell epitopes from literature.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

ABCPred   CBTOPE   LBTOPE   IgPred
     

ABCpred server is to predict B-cell epitope(s) in an antigen sequence, using artificial neural network.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

Conformational B cell prediction method: In the present study using amino acid composition as an input feature for Support vector machine (SVM).

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

Advanced method for predicting linear B-cell epitopes (antigenic region) with high accuracy developed using recent data .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Identification of B--cell epitopes in an antigen for inducing specific class of antibodies .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

PRRDB   ALGpred   PHDcleav   desiRam
     

A comprehensive database of pattern-recogniton receptors and their ligands .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A comprehensive database of pattern-recogniton receptors and their ligands .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

a webserver for Prediction of Human Dicer cleavage sites.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Designing of highly efficient siRNA with minimum mutation approach .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

MARSpred   MYCOprint   E-Learning   Shannon's Index
     

A webserver for Discriminating between Mitochondrial and Cytosolic Aminoacyl tRNA Synthetases .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A tool fort exploration of the interactome of Mycobacterium tuberculosis.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

E-Learning modules in Bioinformatics.

Developed and maintained by PONDICHERRY UNIVERSITY.

 

Diversity index is a quantitative measure that reflects how many different types there are in a dataset.

Developed and maintained by CPCRI, Kasaragod.

MAPS            
           

A software for Analysis and Processing Microsatellite.

Developed and maintained by CPCRI, Kasaragod.

           
             
 
     
BIOINFORMATICS DATABASES
BIOINFORMATICS TOOLS
Genome Protein Interaction Genome Analysis Protein Structure Analysis
Oral Cancer Genes SEDB OrFin SUPER IMPOSE
A. thaliana StressResponsive Genes MIPS C R A T BSDD
SNPScore 3DSDSCAR GFF-Ex Ramachandran Plot
GGRP Antigen-Antibody C-GREx Conformation Angles Packag
Mulberry Genome Database DISPROLIC Bind-Predicttool Water Analysis Package
  CYP3A4 DDIdB ORF PREDICTION PROGRAM Symmetry Equivalent Molecules
Organism Specific Genomes CHpredicts miRMOD version 0.3 CADB - 3.0
FlyBase NRpred MPGT SSEP - 2.0
VirGen GPCRpred REBASER 3dSS
WNV Typer ESLpred RISCI PROTein FRACTals
VICMpred RNApin ContPlot
Dengue SubTyper   tRNAmod ConfPlot
cdBEST Protein Structure Protein Sequence Analysis IntGeom1
GingerEST HET_GROUP_PDB Pdb Sequence Search Tool IntGeom2
  PSSARD PLecDom RM2TS
Nucleotide Sequence DSMP PDB Goodies BHAGEERATH-H
MycoRRdb AGGREDIS RV-Typer BHAGEERATH
DNAsize BetaPropellers DIREP StrGen
FTG Turn Combinations (Cturns) PSST C A S S P
FTGPred ViPs SnS-Align Bhageerath-H Strgen
PolyApred MLDB PSAWeb Radius of Gyration
Icaars DBCP NTXpred Hydrophobicity
  SBPS ISSpred Packing Fraction
Gene Expression SMS-2.0 Pcleavage ProRegIn
SPICEST S C O P AntiBP Protein structure optimizer
Prostate Expression Databases C A P AntiBP4 ProSEE
User gene list search VPDB CPPsite Protein Angle Descriptor
GWBLAST   CellPPD ProTSAV
GWFASTA Biodiversity TumorHoPe Filters for Globular Protein Evaluation
EGPred DOMAP TumorHPD FragmentFinder
S R F Soilinfo HLP 3d-SS
GeneBench Database on Rhododendron HEMOLYTIK PSAP
siRNAPred Database on orchid HemoPI RamaChandranPlot
ECGPred SpiceInfo ParaPep BRM-Parser
  DiaCan PepLife ALPHAPRED
Protein RiceInfo SATPdb Ar_NHPred
MemProt RADOBASE THpdb BetaTPred
Amino Acid Periodicity (AAP) Coffee database GlycoEP BetaTPred2
ProtVirDB Genotype / Phenotype DB GlycoPP BetaTurns
MTB - PCDB Spice Genes   BhairPred
hpvPDB ArthMedBase Protein Interaction Analysis RPFOLD
HIstome Database on Indian Earthworms Proface SARpred
MycoProtease-DB NCDC ProDface TBBpred
Immune epitope database (IEP) Nemedplant PRICE HSLpred
ProtFract ILRONE PIASP LGEpred
SEM Virtual Herbarium Sanjeevini - Docking tool COPid
VAMA Endemic plants PROprint ESLPred2
PBPD Mushrooms MHCBN AHTpdb
SilkProt Foliicolous fungi of JNTBGRI ProPred AHTpin
Viral Protein Database RICEINFO HLA-DR4Pred  
THGS Indian meliolales MHC Protein Structure Prediction
CyanoPhyChe JNTBGRI Plants MHC2Pred PNSAS
Chameleon Sequences FarmersPortal MHCBENCH PhytokinaseSVM
Chameleon Sequences Crop varieties FDR4 PKSIIIexplorer
    IL4pred BHAGEERATH-H
Microarray Drug ADPint BHAGEERATH
  Natural Antibiotics ATPint ACPP
Microarray Semi Synthetic Antibiotics DOMprint CEPS
  Synthetic Antibiotics GTPbinder Constructive Aggregation predictor
M3db Human and animal vaccines NADbinder plant VsupPred
  Antibiotics from Flowering Plants Pprint Duel Pred
  VaxinPAD PreMieR CyclinPred
  VaccineDA VitaPred FAAPred
Pathway imRNA   LipocalinPred
  AntigenDB Other Databases CDKIPred
CardCC & Mpbase PolysacDB Fungal Genetics Stock Center CSSP
  HAPTENDB Glucoma database APSSP2
PuMPE MtbVeb Molecular Database of Brain GammaPred
  CancerTope Prophage database PEPstr
HuMet db AbAg RiDs db Proclass
    RManager PEP2D
ORBiP DrugMint MirtronPred PSLPred
    MycoInDB BTXPred
Enzyme ABMPred Coffee database Mitpred
    Mulberry database Oxypred
Radius of Gyration DMKpred CeRA VGIchan
TypeIII Polyketide synthase   Clostridium-DTDB Mango
Chitinase TOXIpred M P Brain Database ALGpred
LySDB   DIDV PseaPred
GSTPred MetaPred HIVcoPRED RSLPred
KiDoQ   IFNepitope CytoPred
PantibioticPred GDoQ PROPRED1 PFMpred
    CTLPred TBPred
  KetoDrug nHLApred ChloroPred
Chemical   BCIPEP  
  TLR4HI ABCPred CancerPred
PASSCOM   CBTOPE  
  ntEGFR LBTOPE TAPpred
GST Lead Base   IgPred  
  CancerIn PRRDB MMBPred
WebCDK   ALGpred  
  EGFRpred PHDcleav HLAPred
    desiRam  
Cancer DiPCell MARSpred Toxinpred
RespCanDB   MYCOprint  
GICDB HIVfin E-Learning FuzzyAPP
CancerPPD   Shannon's Index  
AntiCP DrugMetZ Database MAPS APSLAP
       
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