Protein Structure Databases
 
 
HET_GROUP_PDB   PSSARD   DSMP   AGGREDIS
     

Heteroatom Groups and Neighbours In Protein Data Bank

Developed and maintained by Centre for Cellular and Molecular Biology

 

Protein Sequence-Structure Analysis Relational Database

Developed and maintained by Centre for Cellular and Molecular Biology

 

Database of Structural Motifs in Proteins (DSMP)

Developed and maintained by Centre for Cellular and Molecular Biology

 

AGGREDIS Provides information regarding the aggregation prone regions of proteins that lack fixed 3D structure in their native states.

Developed and maintained by MKU

BetaPropellers   Turn Combinations (Cturns)   ViPs   MLDB
     

This database contains information on the different types of beta-propeller structural motifs observed in proteins of known three-dimensional structures in the PDB.

Developed and maintained by Centre for Cellular and Molecular Biology

 

This database contains peptides in proteins of known three-dimensional structures in the PDB that represent combination of the beta-turn and gamma-turn structural motifs

Developed and maintained by Centre for Cellular and Molecular Biology

 

ViPs" is a relational database of all known protein structures of virus, either experimentally determined using X-ray diffraction/NMR or predicted by homology modelling.

Developed and maintained by University of Pune

 

MLDB: Macromolecule Ligand DataBase

Developed and maintained by IISc, Bangalore

DBCP   SBPS   SMS-2.0   SCOP
     

Disulphide Bond Connectivity Patterns in Protein Tertiary Structure .

Developed and maintained by Centre for Cellular and Molecular Biology

 

SBPS: Salt Bridges in protein structures

Developed and maintained by IISc, Bangalore

 

An updated database to study the structural plasticity of short peptide fragments in non-redundant proteins

Developed and maintained by IISc, Bangalore

 

A webserver for Structural Classification of Proteins

Developed and maintained by IISc, Bangalore

CAP   VPDB        
         

A graphics package for displaying all side chain conformation angles of the user selected residue in a given protein structure.

Developed and maintained by IISc, Bangalore

 

VPDB comprises primary and derived data of viral proteins and is designed to serve as a single-stop solution for retrieval and analysis of viral proteins

Developed and maintained by PONDICHERRY UNIVERSITY

       
             
 
     
     
BIOINFORMATICS DATABASES
BIOINFORMATICS TOOLS
Genome Protein Interaction Genome Analysis Protein Structure Analysis
Oral Cancer Genes SEDB OrFin SUPER IMPOSE
A. thaliana StressResponsive Genes MIPS C R A T BSDD
SNPScore 3DSDSCAR GFF-Ex Ramachandran Plot
GGRP Antigen-Antibody C-GREx Conformation Angles Packag
Mulberry Genome Database DISPROLIC Bind-Predicttool Water Analysis Package
  CYP3A4 DDIdB ORF PREDICTION PROGRAM Symmetry Equivalent Molecules
Organism Specific Genomes CHpredicts miRMOD version 0.3 CADB - 3.0
FlyBase NRpred MPGT SSEP - 2.0
VirGen GPCRpred REBASER 3dSS
WNV Typer ESLpred RISCI PROTein FRACTals
VICMpred RNApin ContPlot
Dengue SubTyper   tRNAmod ConfPlot
cdBEST Protein Structure Protein Sequence Analysis IntGeom1
GingerEST HET_GROUP_PDB Pdb Sequence Search Tool IntGeom2
  PSSARD PLecDom RM2TS
Nucleotide Sequence DSMP PDB Goodies BHAGEERATH-H
MycoRRdb AGGREDIS RV-Typer BHAGEERATH
DNAsize BetaPropellers DIREP StrGen
FTG Turn Combinations (Cturns) PSST C A S S P
FTGPred ViPs SnS-Align Bhageerath-H Strgen
PolyApred MLDB PSAWeb Radius of Gyration
Icaars DBCP NTXpred Hydrophobicity
  SBPS ISSpred Packing Fraction
Gene Expression SMS-2.0 Pcleavage ProRegIn
SPICEST S C O P AntiBP Protein structure optimizer
Prostate Expression Databases C A P AntiBP4 ProSEE
User gene list search VPDB CPPsite Protein Angle Descriptor
GWBLAST   CellPPD ProTSAV
GWFASTA Biodiversity TumorHoPe Filters for Globular Protein Evaluation
EGPred DOMAP TumorHPD FragmentFinder
S R F Soilinfo HLP 3d-SS
GeneBench Database on Rhododendron HEMOLYTIK PSAP
siRNAPred Database on orchid HemoPI RamaChandranPlot
ECGPred SpiceInfo ParaPep BRM-Parser
  DiaCan PepLife ALPHAPRED
Protein RiceInfo SATPdb Ar_NHPred
MemProt RADOBASE THpdb BetaTPred
Amino Acid Periodicity (AAP) Coffee database GlycoEP BetaTPred2
ProtVirDB Genotype / Phenotype DB GlycoPP BetaTurns
MTB - PCDB Spice Genes   BhairPred
hpvPDB ArthMedBase Protein Interaction Analysis RPFOLD
HIstome Database on Indian Earthworms Proface SARpred
MycoProtease-DB NCDC ProDface TBBpred
Immune epitope database (IEP) Nemedplant PRICE HSLpred
ProtFract ILRONE PIASP LGEpred
SEM Virtual Herbarium Sanjeevini - Docking tool COPid
VAMA Endemic plants PROprint ESLPred2
PBPD Mushrooms MHCBN AHTpdb
SilkProt Foliicolous fungi of JNTBGRI ProPred AHTpin
Viral Protein Database RICEINFO HLA-DR4Pred  
THGS Indian meliolales MHC Protein Structure Prediction
CyanoPhyChe JNTBGRI Plants MHC2Pred PNSAS
Chameleon Sequences FarmersPortal MHCBENCH PhytokinaseSVM
Chameleon Sequences Crop varieties FDR4 PKSIIIexplorer
    IL4pred BHAGEERATH-H
Microarray Drug ADPint BHAGEERATH
  Natural Antibiotics ATPint ACPP
Microarray Semi Synthetic Antibiotics DOMprint CEPS
  Synthetic Antibiotics GTPbinder Constructive Aggregation predictor
M3db Human and animal vaccines NADbinder plant VsupPred
  Antibiotics from Flowering Plants Pprint Duel Pred
  VaxinPAD PreMieR CyclinPred
  VaccineDA VitaPred FAAPred
Pathway imRNA   LipocalinPred
  AntigenDB Other Databases CDKIPred
CardCC & Mpbase PolysacDB Fungal Genetics Stock Center CSSP
  HAPTENDB Glucoma database APSSP2
PuMPE MtbVeb Molecular Database of Brain GammaPred
  CancerTope Prophage database PEPstr
HuMet db AbAg RiDs db Proclass
    RManager PEP2D
ORBiP DrugMint MirtronPred PSLPred
    MycoInDB BTXPred
Enzyme ABMPred Coffee database Mitpred
    Mulberry database Oxypred
Radius of Gyration DMKpred CeRA VGIchan
TypeIII Polyketide synthase   Clostridium-DTDB Mango
Chitinase TOXIpred M P Brain Database ALGpred
LySDB   DIDV PseaPred
GSTPred MetaPred HIVcoPRED RSLPred
KiDoQ   IFNepitope CytoPred
PantibioticPred GDoQ PROPRED1 PFMpred
    CTLPred TBPred
  KetoDrug nHLApred ChloroPred
Chemical   BCIPEP  
  TLR4HI ABCPred CancerPred
PASSCOM   CBTOPE  
  ntEGFR LBTOPE TAPpred
GST Lead Base   IgPred  
  CancerIn PRRDB MMBPred
WebCDK   ALGpred  
  EGFRpred PHDcleav HLAPred
    desiRam  
Cancer DiPCell MARSpred Toxinpred
RespCanDB   MYCOprint  
GICDB HIVfin E-Learning FuzzyAPP
CancerPPD   Shannon's Index  
AntiCP DrugMetZ Database MAPS APSLAP
       
Contact us Site map Archive    
© 2018 BTISNet Inc. All rights reserved                                   Created and maintained jointly by JNTBGRI, Apex Centre and NIC Cell, DBT