Protein Structure Prediction Tools
 
 
PNSAS   PhytokinaseSVM   PKSIIIexplorer   BHAGEERATH-H
     

Predict putative substrates of proteases

Developed and maintained by Advanced Centre for Treatment Research and Education in Cancer, Mumbai

 

A Phytokinase Prediction tool

Developed and maintained by Rajiv Gandhi Centre for Biotechnology

 

A TypeIII Polyketide synthase prediction tool based on Transductive Support Vector Machines

Developed and maintained by Rajiv Gandhi Centre for Biotechnology

 

BHAGEERATH-H: A Homology ab-intio Hybrid Web server for Protein Tertiary Structure Prediction

Developed and maintained by IIT, Delhi

     

BHAGEERATH : An Energy Based Protein Structure Prediction Server

Developed and maintained by IIT, Delhi

 

Anti cancer Prptide Predictor

Developed and maintained by Pondicherry University

 

Conformational Epitope Prediction Server

Developed and maintained by Savitribai Phule Pune University

 

This is a portal for researchers to find the constructive aggregation hot-spots.

Developed and maintained by MKU

plant VsupPred   Duel Pred   CyclinPred   FAAPred
     

Random Forest based prediction tool to predict viral Suppressors of RNA silencing (VSRs).

Developed and maintained by INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY

 

A Webserver for Predicting Plant Proteins Dual-Targeted To Chloroplast and Mitochondria Using Split Protein-Relatedness-Measure Feature

Developed and maintained by Pondicherry University

 

CyclinPred is a SVM based prediction method to identify novel cyclins using various features of proteins.

Developed and maintained by INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY

 

An SVM-based method for the identification of fungal adhesins.

Developed and maintained by INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGYMKU

LipocalinPred   CDKIPredB   CSSP   APSSP2
     

This is an SVM-based prediction method to identify novel lipocalins using various protein features.

Developed and maintained by INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOG

 

SVM based prediction method to identify novel cellular CDK inhibitor proteins using various features of proteins.

Developed and maintained by International Centre for Genetic Engineering and Biotechnology.

 

Consensus Secondary Structure Prediction is a wb based tool designed to predict the protein structure.

Developed and maintained by Indian Institute of Science, Banglore.

 

This server allow to predict the secondary structure of protein's from their amino acid sequence.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

GammaPred   PEPstr   Proclass   PEP2D
     

The GammaPred server predicts the gamma turn residues in the given protein sequence.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

The PEPstrMOD server predicts the tertiary structure of small peptides with sequence length varying between 7 to 25 residues.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

This server allow to predict the class of protein from its amino acid sequence. It predict weather protein belong to class Alpha or Beta or Alpha+Beta or Alpha/Beta.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

Secondary Structure Prediction server that allows users to predict regular secondary structure in their peptides (e.g., H: Helix, E:Strand, C:Coil).

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

PSLPred   BTXPred   Mitpred   Oxypred
     

An SVM Bases server predicts five major subcellular localization of gram negative bacteria.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

BTXpred server is to predict bacterial toxins and its function from primary amino acid sequence usingSVM, HMM and PSI-Blast.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

MitPred is a web-server specifically trained to predict the proteins which are destined to localized in mitochondria in yeast and animals particularly.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

OxyPred is to predict the Oxygen Binding Proteins, Which is carrying Erythrocruorin, Hemoglobin, Myoglobin, Hemerithrin, Leghemoglobin and Hemocyanin.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

VGIchan   Mango   ALGpred   PseaPred
     

A server to predict voltage gated ion channels and classify them into sodium, potassium, calcium and chloride ion channels from primary amino acid sequence.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A server for predicting functional class of a protein. It predict function according to GO categories.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

AlgPred is a web based tool developed to predict allergenic proteins with high accuracy.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

This is a web-server for predicting proteins secreted by Malarial Parasite P.falciparum into infected-erythrocyte.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

RSLPred   CytoPred   PFMpred   TBPred
     

A SVM based method for subcellular localization prediction of rice proteins.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

This method CytoPred is capable of distinguishing cytokines from non-cytokines with an accuracy of 98.29%. The overall accuracy of family and subfamily prediction is 96.34% and 92.64% respectively.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

PFMpred is developed for predicting mitochondrial proteins of malaria parasite Plasmodium falciparum .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

TBpred is a prediction server that predicts four subcellular localization (cytoplasmic,integral membrane,secretory and membrane attached by lipid anchor) of mycobacterial proteins.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

ChloroPred   CancerPred   TAPpred   MMBPred
     

A web based tool for prediction of chloroplast proteins. ChloroPred takes an amino acid sequence as input and predicts the proteins.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

CancerPred is a web-server specially trained for predicting the Cancerlectins.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

An on-line service for predicting binding affinity of peptides toward the TAP transporter.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

a web server for predicting mutated high affinity and promiscuous MHC class-I binding peptides from protein sequence.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

HLAPRED   Toxinpred   FuzzyAPP   APSLAP
     

a web server for identification and prediction of HLA binding regions from antigen sequence.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Prediction and designing of toxic/non-toxic peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A Fuzzylogic based Allergenic Protein Predictor .

Developed and maintained by PONDICHERRY UNIVERSITY, PONDICHERRY.

 

An Adaptive Boosting Technique for Predicting Subcellular Localization of Apoptosis Protein.

Developed and maintained by PONDICHERRY UNIVERSITY, ONDICHERRY

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