Protein Sequence Analysis Tools
 
 
Pdb Sequence Search Tool   PLecDom   PDB Goodies   RV-Typer
     

Sequence retrieval, aminoacid composition, molecular weight and volume, sequence length search, molecular weight search, identical pattern matching, similar pattern matching, isoelectric point.

Developed and maintained by Indian Institute of Science, Banglore

 

A program for identification, annotation and assignation of broad substrate specificity to Plant Lectin Domains using sequence information alone.

Developed and maintained by National Institute of Plant Genome Research

 

PDB Goodies (version 1.0) is a web based Graphical User Interface (GUI) to manipulate the Protein Data Bank (PDB) file containing the three dimensional atomic coordinates of protein structures.

Developed and maintained by Indian Institute of Science, Banglore

 

RV-Typer server assigns serotype to query sequence(s) of VP1 protein sequences of Rhinovirus -A, -B & -C. .

Developed and maintained by Savitribai Phule Pune University

DIREP   Zifpredict   ZifNN   Zifpredict_ihbe
     

DIREP - DIRECT REPEATS WEB SERVER

Developed and maintained by INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY

 

A webserver for predicting zinc fingers and their target sites

Developed and maintained by IIT, Delhi

 

A tool for designing zinc fingers for any target DNA synergistically

Developed and maintained by IIT, Delhi

 

A tool for designing zinc finger proteins for any target DNA using either modular or synergistic approaches

Developed and maintained by IIT, Delhi

CRISPcut   PSST   SnS-Align   PSAWeb
     

A webserver for selection of potential CRISPR-Cas9 targets specific to human stem cells.

Developed and maintained by IIT, Delhi.

 

Pdb Sequence Search Tool ia a tool for Sequence Retrieval, Aminoacid composition, Molecular Weight and Volume, Sequence Length Search, Molecular Weight Search, Identical Pattern Matching, Similar Pattern Matching, Isoelectric Point etc.

Developed and maintained by Indian Institute of Science, Banglore.

 

SnS-Align (Structure and Sequence Alignment) is a tool developed in perl, used to align the protein sequences by combining sequence and structure information at an instance. .

Developed and maintained by CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY, HYDERABAD (BIC @ CCMB).

 

PSAweb is a web server, developed to analyze the amino acid sequence and multiple sequence alignment of proteins.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

NTXpred   ISSpred   Pcleavage   AntiBP
     

NTXpred server is to predict Neurotoxins and its source and probable function from primary amino acid sequence using SVM based on composition and PSI-Blast.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Identification of Inteins hiding in their protein sequences.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Identification of protesosomal cleavage sites in a protein sequence.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Mapping of antibacterial peptides in a protein sequence.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

AntiBP4   CPPsite   CellPPD   TumorHoPe
     

An advanced server for predicting antibacterial peptides with high precision.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

CPPsite is a database of experimentally validated cell penetrating Peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Computer-aided Designing of efficient cell penetrating peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A comprehensive database experimentally characterized tumor homing peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

TumorHPD   HLP   HEMOLYTIK   HemoPI
     

A webserver for dedicated for designing tumor homing peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Designing of stable antibacterial peptides .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A repository of experimentally validated hemolytic and non-hemolytic peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Prediction and virtual screening of hemolytic peptides .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

ParaPep   PepLife   SATPdb   THPdb
     

A webserver for Compilation of experimentally validated anti-parasitic peptides and their structures .

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

PEPlife is a manually curated database of experimentally validated therapeutic peptides and their halflives.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A database of structurally annotated peptides, it contain wide range of peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A database of structurally annotated peptides, it contain wide range of peptides.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

GlycoEP   GlycoPP        
         

A webserver for Prediction of C-, N- and O-glycosylation site in eukaryotic proteins.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

 

A webserver for Prediction of potential N-and O-glycosites in prokaryotic proteins.

Developed and maintained by INSTITUTE OF MICROBIAL TECHNOLOGY, CHANDIGARH.

       
             
 
     
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