Protein Databases
 
 
MemProt   Amino Acid Periodicity (AAP)   ProtVirDB   MTB - PCDB
     

It provides sequence and structural information of membrane proteins.

Developed and maintained by Pondicherry University

 

Information on all the different types of single amino acid periodicities observed in proteins of known three-dimensional structures in the PDB.

Developed and maintained by Centre for Cellular and Molecular Biology

 

A database on protozoan virulent proteins

Developed and maintained by International Centre for Genetic Engineering and Biotechnology

 

Consists of Mycobacterium tuberculosis proteome comparison data.

Developed and maintained by MGIMS, Sevagram

 
 
hpvPDB   HIstome   MycoProtease-DB   Immune epitope database (IEP)
     

Human papillomavirus Proteome Database provides information on all HPV strains sequenced till its launching time

Developed and maintained by MGIMS, Sevagram

 

Infomation about human histone variants, sites of their post-translational modifications and about various histone modifying enzymes.

Developed and maintained by Advanced Centre for Treatment Research and Education in Cancer, Mumbai

 

MTB and NTM proteases information such as Protease Name, Gene Name, Clan, Family, Classification, Catalytic Type, Cellular Location, Function, Active site, protein sequence, protein parameters, phylogenetic analysis etc.

Developed and maintained by MGIMS, Sevagram

 

An online repository that provides a catalog of experimentally proven linear T and B cell epitopes derived from various literatures listed in PubMed database and other publicly available protein sequence databases.

Developed and maintained by Pondicherry University

Viral Protein Database   THGS   CyanoPhyChe   CHAMPEP-EXACT
     

Provides primary and derived data of viral proteins and is designed to serve as a single-stop solution for retrieval and analysis of viral proteins.

Developed and maintained by Pondicherry University

 

A web based database of Transmembrane Helices in Genome Sequences.

Developed and maintained by IISc, Bangalore

 

A database for physico-chemical properties of cyanobacterial proteins.

Developed and maintained by University of Hyderabad

 

Chameleon Sequences (exact match of ‘probe’ with ‘target’) (CHAMPEP-EXACT) This database contains information on all ‘chameleon’ peptides that have identical sequence but different conformations in proteins

Developed and maintained by Centre for Cellular and Molecular Biology

CHAMPEP-SLIDING   Zif-BASE   ProtFract   SEM
     

TChameleon Sequences (sliding ‘probe’ over ‘target’) (CHAMPEP-SLIDING)

Developed and maintained by Centre for Cellular and Molecular Biology

 

A database of zinc finger proteins and associated resources.

Developed and maintained by IIT, Delhi.

 

A server to analyse protein interior and protein exterior properties with fractal dimension.

Developed and maintained byUniversity of Pune.

 

Summey Equivalent Molecule (SEM)is a web based GUI to generate and visualize the macromolecules.

Developed and maintained by INDIAN INSTITUTE OF SCIENCE, BANGALORE.

VAMA   PBPD   SilkProt    
       

It Calculates and plots residue variability in a given set of aligned sequences based on known conservation groups of a protein.

Developed and maintained byCENTRE FOR CELLULAR AND MOLECULAR BIOLOGY, HYDERABAD (BIC @ CCMB).

 

Peptide Binding Protein Database (PepBind) is a derived database of available structures of protein-peptide complexes from Protein Data Bank (PDB).

Developed and maintained by PONDICHERRY UNIVERSITY.

 

An Annotated Protein database for Silkworm and Mulberry.

Developed and maintained by CENTRAL SERICULTURAL RESEARCH AND TRAINING INSTITUTE, MYSORE.

   
             
 
     
BIOINFORMATICS DATABASES
BIOINFORMATICS TOOLS
Genome Protein Interaction Genome Analysis Protein Structure Analysis
Oral Cancer Genes SEDB OrFin SUPER IMPOSE
A. thaliana StressResponsive Genes MIPS C R A T BSDD
SNPScore 3DSDSCAR GFF-Ex Ramachandran Plot
GGRP Antigen-Antibody C-GREx Conformation Angles Packag
Mulberry Genome Database DISPROLIC Bind-Predicttool Water Analysis Package
  CYP3A4 DDIdB ORF PREDICTION PROGRAM Symmetry Equivalent Molecules
Organism Specific Genomes CHpredicts miRMOD version 0.3 CADB - 3.0
FlyBase NRpred MPGT SSEP - 2.0
VirGen GPCRpred REBASER 3dSS
WNV Typer ESLpred RISCI PROTein FRACTals
VICMpred RNApin ContPlot
Dengue SubTyper   tRNAmod ConfPlot
cdBEST Protein Structure Protein Sequence Analysis IntGeom1
GingerEST HET_GROUP_PDB Pdb Sequence Search Tool IntGeom2
  PSSARD PLecDom RM2TS
Nucleotide Sequence DSMP PDB Goodies BHAGEERATH-H
MycoRRdb AGGREDIS RV-Typer BHAGEERATH
DNAsize BetaPropellers DIREP StrGen
FTG Turn Combinations (Cturns) PSST C A S S P
FTGPred ViPs SnS-Align Bhageerath-H Strgen
PolyApred MLDB PSAWeb Radius of Gyration
Icaars DBCP NTXpred Hydrophobicity
  SBPS ISSpred Packing Fraction
Gene Expression SMS-2.0 Pcleavage ProRegIn
SPICEST S C O P AntiBP Protein structure optimizer
Prostate Expression Databases C A P AntiBP4 ProSEE
User gene list search VPDB CPPsite Protein Angle Descriptor
GWBLAST   CellPPD ProTSAV
GWFASTA Biodiversity TumorHoPe Filters for Globular Protein Evaluation
EGPred DOMAP TumorHPD FragmentFinder
S R F Soilinfo HLP 3d-SS
GeneBench Database on Rhododendron HEMOLYTIK PSAP
siRNAPred Database on orchid HemoPI RamaChandranPlot
ECGPred SpiceInfo ParaPep BRM-Parser
  DiaCan PepLife ALPHAPRED
Protein RiceInfo SATPdb Ar_NHPred
MemProt RADOBASE THpdb BetaTPred
Amino Acid Periodicity (AAP) Coffee database GlycoEP BetaTPred2
ProtVirDB Genotype / Phenotype DB GlycoPP BetaTurns
MTB - PCDB Spice Genes   BhairPred
hpvPDB ArthMedBase Protein Interaction Analysis RPFOLD
HIstome Database on Indian Earthworms Proface SARpred
MycoProtease-DB NCDC ProDface TBBpred
Immune epitope database (IEP) Nemedplant PRICE HSLpred
ProtFract ILRONE PIASP LGEpred
SEM Virtual Herbarium Sanjeevini - Docking tool COPid
VAMA Endemic plants PROprint ESLPred2
PBPD Mushrooms MHCBN AHTpdb
SilkProt Foliicolous fungi of JNTBGRI ProPred AHTpin
Viral Protein Database RICEINFO HLA-DR4Pred  
THGS Indian meliolales MHC Protein Structure Prediction
CyanoPhyChe JNTBGRI Plants MHC2Pred PNSAS
Chameleon Sequences FarmersPortal MHCBENCH PhytokinaseSVM
Chameleon Sequences Crop varieties FDR4 PKSIIIexplorer
    IL4pred BHAGEERATH-H
Microarray Drug ADPint BHAGEERATH
  Natural Antibiotics ATPint ACPP
Microarray Semi Synthetic Antibiotics DOMprint CEPS
  Synthetic Antibiotics GTPbinder Constructive Aggregation predictor
M3db Human and animal vaccines NADbinder plant VsupPred
  Antibiotics from Flowering Plants Pprint Duel Pred
  VaxinPAD PreMieR CyclinPred
  VaccineDA VitaPred FAAPred
Pathway imRNA   LipocalinPred
  AntigenDB Other Databases CDKIPred
CardCC & Mpbase PolysacDB Fungal Genetics Stock Center CSSP
  HAPTENDB Glucoma database APSSP2
PuMPE MtbVeb Molecular Database of Brain GammaPred
  CancerTope Prophage database PEPstr
HuMet db AbAg RiDs db Proclass
    RManager PEP2D
ORBiP DrugMint MirtronPred PSLPred
    MycoInDB BTXPred
Enzyme ABMPred Coffee database Mitpred
    Mulberry database Oxypred
Radius of Gyration DMKpred CeRA VGIchan
TypeIII Polyketide synthase   Clostridium-DTDB Mango
Chitinase TOXIpred M P Brain Database ALGpred
LySDB   DIDV PseaPred
GSTPred MetaPred HIVcoPRED RSLPred
KiDoQ   IFNepitope CytoPred
PantibioticPred GDoQ PROPRED1 PFMpred
    CTLPred TBPred
  KetoDrug nHLApred ChloroPred
Chemical   BCIPEP  
  TLR4HI ABCPred CancerPred
PASSCOM   CBTOPE  
  ntEGFR LBTOPE TAPpred
GST Lead Base   IgPred  
  CancerIn PRRDB MMBPred
WebCDK   ALGpred  
  EGFRpred PHDcleav HLAPred
    desiRam  
Cancer DiPCell MARSpred Toxinpred
RespCanDB   MYCOprint  
GICDB HIVfin E-Learning FuzzyAPP
CancerPPD   Shannon's Index  
AntiCP DrugMetZ Database MAPS APSLAP
       
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